PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013909
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ZF-HD
Protein Properties Length: 318aa    MW: 34499.2 Da    PI: 7.2676
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682236PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.22e-3349107360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                   v YkeClkNhAa++G+ha+DGCgEfmp+++ +  ++++lkCaACgCHRnFHRre  +e
    Lsa013909  49 VVAYKECLKNHAATIGSHALDGCGEFMPAPTLNpQEPTSLKCAACGCHRNFHRRERINE 107
                  689****************************99999******************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2150103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.7E-2850104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.99552103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.4E-3052103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.61E-16164230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27164230IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-24169226IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDIKNPTSAA AATDSPDTDG ETPLHSQLIK PFSSFPNGKK HHHQPPPTVV AYKECLKNHA  60
ATIGSHALDG CGEFMPAPTL NPQEPTSLKC AACGCHRNFH RRERINEVYA TADNKTHFIE  120
FHHPSSPPQP TNYAFAPHVL LSLGTADQTH AVVTPGTPAA IRIENPNGRK RFRTKFSQDQ  180
KEKMSLFAEK VGWKMQRCDD KMVADFCNEI GIRRGIFKVW MHNNKNTIGR KDKEPTSPTT  240
TAPPITTLPS TAGVINVYNN GRLVVTSESH DHEEDINVDG RDNSNSSDQE NDDGGGGAGS  300
SGGAVHLQAS TNGSSSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-211702271875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257380.12e-74PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9SEZ11e-58ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A103YAK21e-153A0A103YAK2_CYNCS; Uncharacterized protein
STRINGPGSC0003DMT4000802884e-70(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-59zinc finger homeodomain 1